Susmita Roy

The paper introduces STEM, a model that captures ion-coordination dynamics in RNA folding, showing how Mg2+ coordination drives conformational transitions and folding pathways.

This study investigates how ionic conditions and structural flexibility affect RNA folding by comparing cryo-EM and XRD structures of the SARS-CoV-2 frameshifting stimulatory element.

This study maps allosteric rewiring in viral RNA by analyzing how sequence changes affect protein binding mechanisms through molecular dynamics and graph-network analysis.

This study investigates solvation dynamics in two viral RNAs, revealing how RNA conformational flexibility and protein binding influence hydration and ion reorganization.

The paper uses simulations to analyze Mg2+ coordination with RNA, identifying dynamic pre-chelate complexes and a new meta-sphere coordination mechanism.

EVOLVE is a web platform that analyzes multi-sequence data to identify concerning variants using phase transition principles and provides tools for exploring mutational metrics.

This study develops a kinetic network model to analyze how steroid treatment affects T-cell dynamics and immune regulation phases, identifying an optimal GC dose for transitioning between immune states.