Author

Ri-ichiroh Manabe

RIKEN

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Chitose TakahashiiD· 2 shared Michihira TagamiiD· 2 shared Yasushi OkazakiiD· 2 shared Akira HasegawaiD· 1 shared Annelies VerboniD· 1 shared Ayumi Taguchi· 1 shared Charles PlessyiD· 1 shared Daisuke YoshimotoiD· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersCancer Biology

Chitose TakahashiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Integrating spatial and single-cell multi-omics analysis of induced pluripotent stem cell-derived cervical adenocarcinoma model

Saki Kamata, Ayumi Taguchi, Hitoshi Iuchi, Yuji Ikeda, Rie Maruyama, Yoko Nakanishi, Toshihiro Sugi, Yuki Okuma, Osamu Kobayashi, Naoko Tomita, Daisuke Yoshimoto, Lifang Wang, Nozomi Moritsugu, Chitose Takahashi, Michihira Tagami, , Kei Kawana

The paper establishes an HPV18-associated cervical adenocarcinoma model using iRCs and integrates spatial transcriptomics with single-cell multi-omics to identify Gland_A as a key component with specific molecular features.

bioRxiv · May 6, 2026 · PreprintCancer Biology

Genome-wide mapping of the Galleria mellonella larvae transcription start sites during fungal infection and treatment

Imad Abugessaisa, Mickey Konings, Ri-ichiroh Manabe, Michihira Tagami, Jessica Severin, Akira Hasegawa, Tsugumi Kawashima, Hiroko Kinoshita, Shohei Noma, Chitose Takahashi, Annelies Verbon, Yasushi Okazaki, Wendy W. J. van de Sande, Takeya Kasukawa

This study maps transcription start sites and active enhancers in Galleria mellonella larvae during fungal infection and treatment using LQ-ssCAGE.

bioRxiv · Jan 20, 2025 · PreprintGenomics

clonotypeR--high throughput analysis of T cell antigen receptor sequences

Charles Plessy, Encarnita Mariotti-Ferrandiz, Ri-Ichiroh Manabe, Shohei Hori

clonotypeR analyzes T cell receptor sequences from high-throughput data to identify and quantify clonotypes, providing tools for downstream analysis.

bioRxiv · Oct 8, 2015 · PreprintBioinformatics