Author

S. Uygun

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Evolutionary Biology· 1

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Research Focus:cell type annotation· 3 Research Focus:gene regulatory network inference· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Assay:DNA methylation· 2 Approach:machine learning (classical)· 2 Organism:plant (other)· 2 Approach:statistical model· 2

Frequent Co-Authors

S.-H. Shiu· 4 shared A. Seddon· 1 shared B. M. Moore· 1 shared C. B. Azodi· 1 shared C. Barry· 1 shared G. A. Howe· 1 shared J. A. Noble· 1 shared K. Sugimoto· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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4 shared papersPlant Biology

S.-H. Shiu

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4 papers

Recent·Most cited

The SEEL Motif and Members of the MYB-related REVEILLE Transcription Factor Family are Important for the Expression of LORELEI in the Synergid Cells of the Arabidopsis Female Gametophyte

J. A. Noble, A. Seddon, S. Uygun, S. E. Smith, S.-H. Shiu, R. Palanivelu

bioRxiv · Aug 17, 2021Plant Biology

Optimizing the use of gene expression data to predict plant metabolic pathway memberships

P. Wang, B. M. Moore, S. Uygun, M. D. Lehti-Shiu, C. Barry, S.-H. Shiu

This study predicts plant metabolic pathway memberships using gene expression data and machine learning, finding that unsupervised learning and expression similarity outperform naive methods in some cases.

bioRxiv · Jul 15, 2020Plant Biology

Cis-regulatory code for predicting plant cell-type specific high salinity response

S. Uygun, C. B. Azodi, S.-H. Shiu

The paper identifies cis-regulatory elements in Arabidopsis root cell types that predict high salinity gene responses and shows their effectiveness compared to in vitro transcription factor data.

bioRxiv · Nov 8, 2018Plant Biology

Regulatory Divergence In Wound-Responsive Gene Expression In Domesticated And Wild Tomato

M.-J. Liu, K. Sugimoto, S. Uygun, N. Panchy, M. S. Campbell, M. Yandell, G. A. Howe, S.-H. Shiu

This study identifies cis- and trans-regulatory divergence in wound-responsive gene expression between wild and domesticated tomato species.

bioRxiv · Apr 4, 2017Evolutionary Biology