Author

Saira Jabeen

Colorado State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Approach:contrastive learning· 1 Organism:human· 1

Frequent Co-Authors

Asa Ben‐HuriD· 2 shared Anireddy S. N. ReddyiD· 1 shared Fahad UllahiD· 1 shared Maayan SaltoniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Asa Ben‐HurORCID

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2 papers

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedDec 2, 2025

A Comprehensive Evaluation of Self Attention for Detecting Regulatory Feature Interactions

Saira Jabeen, Asa Ben‐Hur

This study evaluates attention-based methods for detecting transcription factor cooperativity, showing that entropy-enhanced models improve interpretability and precision.

1 citation

ChIP-seqdeep learning

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedMar 22, 2023

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Fahad Ullah, Saira Jabeen, Maayan Salton…·Asa Ben‐Hur

The paper investigates how transcription factors regulate intron retention through open chromatin analysis and deep learning models, finding zinc finger factors are prevalent in intron retention events.

21 citations

humanChIP-seq

𝕏 PostBluesky