Author

A. Sathyanarayana Reddy

Colorado State UniversityORCID 0000-0002-4038-4091Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Assay:DNA methylation· 1 Assay:Hi-C· 1 Organism:human· 1 Organism:rat· 1

Frequent Co-Authors

Asa Ben‐HuriD· 2 shared Ahmed DaoudiD· 1 shared Fahad UllahiD· 1 shared Haoxuan ZengiD· 1 shared Jiakang Wang· 1 shared Jie LiuiD· 1 shared Maayan SaltoniD· 1 shared Paul Duclos Parodi· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Asa Ben‐HurORCID

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2 papers

Recent·Most cited

Deep-Plant: a supervised foundation model for plant regulatory genomics

Ahmed Daoud, Soumyadip Roy, Haoxuan Zeng, Xinyu Bao, Zhenhao Zhang, Jiakang Wang, Paul Duclos Parodi, A. Sathyanarayana Reddy, Jie Liu, Asa Ben‐Hur

This paper introduces a supervised foundation model for plant regulatory genomics that predicts chromatin state from genomic sequence, showing improved speed, accuracy, and interpretability over DNA language models.

bioRxiv · Apr 9, 2026 · PreprintGenomics

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Fahad Ullah, Saira Jabeen, Maayan Salton, Anireddy S. N. Reddy, Asa Ben‐Hur

The paper investigates how transcription factors regulate intron retention through open chromatin analysis and deep learning models, finding zinc finger factors are prevalent in intron retention events.

Genome biology · Mar 22, 2023Peer-reviewedGenomics