Author

Fahad Ullah

Colorado State UniversityORCID 0009-0006-7685-7141Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:human· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Asa Ben‐HuriD· 2 shared Anireddy S. N. ReddyiD· 1 shared Maayan SaltoniD· 1 shared Saira Jabeen· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersGenomics

Asa Ben‐HurORCID

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2 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedMar 22, 2023

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Fahad Ullah, Saira Jabeen, Maayan Salton…·Asa Ben‐Hur

The paper investigates how transcription factors regulate intron retention through open chromatin analysis and deep learning models, finding zinc finger factors are prevalent in intron retention events.

21 citations

humanChIP-seq

𝕏 PostBluesky

GenomicsNucleic Acids ResearchPeer-reviewedApr 21, 2021

A Self-Attention Model for Inferring Cooperativity between Regulatory Features

Fahad Ullah, Asa Ben‐Hur

SATORI is a self-attention model that detects regulatory element interactions, identifying more experimentally verified TF-TF interactions than existing methods without requiring post-processing.

38 citations

DNA methylationChIP-seq

𝕏 PostBluesky