Author

Shivam P. Agrawal

University of Essex

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Mariya ShtumpfiD· 3 shared Vladimir B. TeifiD· 3 shared Divya R. Jacob· 2 shared Ahmad ShafieiiD· 1 shared Anastasija Drobysevskaja· 1 shared Anish ThomasiD· 1 shared Ankita Gurjar· 1 shared Chris M. Armstrong· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Mariya ShtumpfORCID

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Author profile →

3 papers

Recent·Most cited

Genomic alterations and transcriptional phenotypes in circulating tumor DNA and matched metastatic tumor

Nobuyuki Takahashi, Lőrinc Sándor Pongor, Shivam P. Agrawal, Mariya Shtumpf, Ankita Gurjar, Vinodh N. Rajapakse, Ahmad Shafiei, Christopher William Schultz, Sehyun Kim, Diana Roame, Paula Carter, Rasa J Vilimas, Samantha Nichols, Parth Anil Desai, William Douglas Figg, , Anish Thomas

This study compares genomic alterations and transcriptional phenotypes in circulating tumor DNA and matched metastatic tumors in SCLC patients, finding cfDNA reflects tumor mutations, identifies resistance mechanisms, and tracks tumor evolution.

Genome Medicine · Feb 25, 2025Peer-reviewedCancer Biology

Nucleosome reorganisation in breast cancer tissues

Divya R. Jacob, Wilfried M. Guiblet, Hulkar Mamayusupova, Mariya Shtumpf, Isabella Ciuta, Luminiţa Ruje, Svetlana Gretton, Milena Bikova, Clark Correa, Emily Dellow, Shivam P. Agrawal, Navid Shafiei, Anastasija Drobysevskaja, Chris M. Armstrong, Jonathan D. G. Lam, , Vladimir B. Teif

This study identifies patient-specific and common nucleosome repositioning patterns in breast cancer tissues and links them to cancer pathways and liquid biopsy applications.

Clinical Epigenetics · Apr 1, 2024Peer-reviewedGenomics

NucPosDB: a database of nucleosome positioning in vivo and nucleosomics of cell-free DNA

Mariya Shtumpf, Kristan V. Piroeva, Shivam P. Agrawal, Divya R. Jacob, Vladimir B. Teif

NucPosDB curates nucleosome positioning data and cfDNA datasets for gene regulation and diagnostics, enabling analysis of nucleosome occupancy and computational model training.

Chromosoma · Jan 21, 2022Peer-reviewedGenomics