Author

Shixiong Yan

Yunnan Agricultural University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:multiple species· 2 Research Focus:variant calling· 2 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Changrong GeiD· 3 shared Dahai GuiD· 3 shared Dong‐Dong WuiD· 3 shared Jingying ZhaoiD· 3 shared Junjing Jia· 3 shared Rouhan Zhao· 3 shared Sisi YuaniD· 3 shared Siwen WuiD· 3 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Changrong GeORCID

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3 papers

Recent·Most cited

Large scale loss-of-function mutations during chicken evolution and domestication

Siwen Wu, Kun Wang, Xuehai Ge, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Xiannian Zi, Dahai Gu, Lixian Liu, Qihua Li, , Zhengchang Su

The paper identifies widespread loss-of-function mutations in chicken genomes during evolution and domestication, showing non-random patterns and selection-driven gene loss.

bioRxiv · May 21, 2024 · PreprintBioinformatics

Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in sub-telomeric regions with high G/C contents

Siwen Wu, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Xiannian Zi, Dahai Gu, Lixian Liu, Qihua Li, Dong‐Dong Wu, Zhengchang Su, , Kun Wang

The paper annotates four high-quality chicken genomes, identifying over 1,400 missing genes in sub-telomeric regions with high G/C content that were previously absent from reference annotations.

bioRxiv · Jan 8, 2024 · PreprintBioinformatics

Artificial selection footprints in domestic chicken genomes

Siwen Wu, Tengfei Dou, Kun Wang, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu, Zonghui Jian, Jingying Zhao, Rouhan Zhao, Hao Wu, Dahai Gu, Lixian Liu, Qihua Li, Dong‐Dong Wu, , Junjing Jia

This study identifies numerous selective sweeps and genes under artificial selection in indigenous and commercial chickens using re-sequencing and statistical analysis.

bioRxiv · Mar 22, 2023 · PreprintBioinformatics