Author

Sirisha Thippabhotla

University of Kansas

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ben LiuiD· 2 shared Cuncong ZhongiD· 2 shared Jun ZhangiD· 2 shared Adam Podgorny· 1 shared Shibu YoosephiD· 1 shared Youngik YangiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Ben LiuORCID

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2 papers

Recent·Most cited

Integrated de novo Gene Prediction and Peptide Assembly of Metagenomic Sequencing Data

Sirisha Thippabhotla, Ben Liu, Adam Podgorny, Shibu Yooseph, Youngik Yang, Jun Zhang, Cuncong Zhong

This paper introduces iMPP, a workflow for integrated de novo gene prediction and peptide assembly in metagenomics, achieving high recall and precision in gene calling and peptide recovery.

NAR Genomics and Bioinformatics · Jan 10, 2023Peer-reviewedBioinformatics

Metagenomic Noncoding RNA Profiling and Biomarker Discovery

Ben Liu, Sirisha Thippabhotla, Jun Zhang, Cuncong Zhong

This paper introduces DRAGoM, a noncoding RNA homology search algorithm for metagenomics, showing its ability to identify ncRNA biomarkers in Type-2 diabetes gut microbiome data.

Frontiers in Genetics · May 5, 2021Peer-reviewedBioinformatics