Ben Liu

SNAIL is a named entity recognition framework that identifies bioinformatics software and databases in scientific texts, outperforming existing methods and enabling meta-analysis of tool usage.

This paper introduces iMPP, a workflow for integrated de novo gene prediction and peptide assembly in metagenomics, achieving high recall and precision in gene calling and peptide recovery.

This paper introduces DRAGoM, a noncoding RNA homology search algorithm for metagenomics, showing its ability to identify ncRNA biomarkers in Type-2 diabetes gut microbiome data.