Cuncong Zhong

SNAIL is a named entity recognition framework that identifies bioinformatics software and databases in scientific texts, outperforming existing methods and enabling meta-analysis of tool usage.

This study identifies MZF1-mediated GAPDH overexpression as a driver of glycolytic reprogramming and neuroendocrine progression in advanced prostate cancer, suggesting metabolic targeting as a therapeutic strategy.

This paper introduces VAT, a unified sequence alignment framework that improves performance and adaptability across diverse genomics tasks.

This paper introduces iMPP, a workflow for integrated de novo gene prediction and peptide assembly in metagenomics, achieving high recall and precision in gene calling and peptide recovery.

This paper introduces DRAGoM, a noncoding RNA homology search algorithm for metagenomics, showing its ability to identify ncRNA biomarkers in Type-2 diabetes gut microbiome data.

This paper clusters RNA 3D loop structures to discover new structural motifs and variants, identifying both known and potential novel functional motifs.

CLAN improves duplex read mapping in crosslinked RNA sequencing by enhancing sensitivity and alignment accuracy.