Author

Adam Podgorny

University of Kansas

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Andrew D. HechtiD· 1 shared Ben LiuiD· 1 shared Cuncong ZhongiD· 1 shared GW McElfreshiD· 1 shared Huijing WangiD· 1 shared J. Christian J. RayiD· 1 shared Jun ZhangiD· 1 shared Nishantha Wijesuriya· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Andrew D. HechtORCID

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2 papers

Recent·Most cited

Integrated de novo Gene Prediction and Peptide Assembly of Metagenomic Sequencing Data

Sirisha Thippabhotla, Ben Liu, Adam Podgorny, Shibu Yooseph, Youngik Yang, Jun Zhang, Cuncong Zhong

This paper introduces iMPP, a workflow for integrated de novo gene prediction and peptide assembly in metagenomics, achieving high recall and precision in gene calling and peptide recovery.

NAR Genomics and Bioinformatics · Jan 10, 2023Peer-reviewedBioinformatics

Overlapping stimulons arising in response to divergent stresses in Escherichia coli

Huijing Wang, GW McElfresh, Nishantha Wijesuriya, Adam Podgorny, Andrew D. Hecht, J. Christian J. Ray

The paper shows that E. coli exhibits overlapping stress responses to starvation and lactose toxicity, with distinct gene expression shifts and functional signatures in each condition.

bioRxiv · Dec 17, 2021 · PreprintBioinformatics