Author

Stephen Young

Primary ORCID profile (0000-0001-6768-0619 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Stephen YoungiD1 paper

Biology Disciplines

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Genomics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alexandre J. Kabla· 1 shared Andrew J Heron· 1 shared Anthony Warland· 1 shared Botond Sipos· 1 shared Caleb M. RadensiD· 1 shared Chris Wright· 1 shared Daniel J Turner· 1 shared Daniel Jachimowicz· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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1 shared paperDevelopmental Biology

Alexandre J. Kabla

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3 papers

Recent·Most cited

Pan-cell-type prediction of splicing patterns from sequence and splicing factor expression

Kalin Vetsigian, Jenessa Lancaster, Ioan Ieremie, Caleb M. Radens, Paul Smyth, Stephen Young

The paper introduces PanExonNet, a deep learning framework that predicts splicing patterns by integrating sequence and splicing factor expression, showing improved context specificity and generalization to new cell types.

bioRxiv · Feb 19, 2026 · PreprintGenomics

Highly parallel direct RNA sequencing on an array of nanopores

Daniel R Garalde, Elizabeth A Snell, Daniel Jachimowicz, Andrew J Heron, Mark Bruce, Joseph Lloyd, Anthony Warland, Nadia Pantic, Tigist Admassu, Jonah Ciccone, Sabrina Serra, Jemma Keenan, Samuel Martin, Luke McNeill, Jayne Wallace, , Daniel J Turner

This paper demonstrates direct RNA sequencing using an array of nanopores, offering advantages over traditional RNA-seq methods by avoiding amplification and reverse transcription biases.

bioRxiv · Aug 12, 2016Genomics

Tissue dynamics of the forebrain neural plate

Stephen Young, Joel N. Jennings, Guy B. Blanchard, Alexandre J. Kabla, Richard J. Adams

This study maps cell behavior in the zebrafish forebrain neural plate using live imaging and computational analysis, revealing novel mechanisms of tissue dynamics and morphogenesis.

bioRxiv · Mar 9, 2015 · PreprintDevelopmental Biology