Author

Hui Cheng

Helmholtz MunichORCID 0000-0003-2579-7004Unclaimed ORCID profile · follow to get notified of new preprints

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Hui Cheng1 paper · Sichuan University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1

Frequent Co-Authors

Annalisa MarsicoiD· 2 shared Giulia CantiniiD· 1 shared Jian TangiD· 1 shared Marcel H. SchulziD· 1 shared Maria A. WörheideiD· 1 shared Maria Colomé‐TatchéiD· 1 shared Matthias ArnoldiD· 1 shared Ranjan Kumar MajiiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

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10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Annalisa MarsicoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 12, 2026

miRXplain: explainable isomiR-aware microRNA target prediction using CLIP-L experiments and hybrid attention transformers

Ranjan Kumar Maji, Giulia Cantini, Hui Cheng…·Marcel H. Schulz

miRXplain predicts miRNA-mRNA interactions using CLIP-L data and hybrid attention transformers, outperforming existing models and revealing isomiR-specific targeting mechanisms.

DOI 10.64898/2026.02.11.703270

deep learninggene regulatory network inference

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 17, 2024

Path-based reasoning in biomedical knowledge graphs with BioPathNet

Yue Hu, Svitlana Oleshko, Samuele Firmani…·Annalisa Marsico

BioPathNet improves link prediction in biomedical knowledge graphs by using path-based reasoning, outperforming existing methods and identifying novel drug indications and gene interactions.

7 citations

graph neural networkcontrastive learning

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