Author

Samuele Firmani

Helmholtz MunichORCID 0009-0007-2897-0315Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:contrastive learning· 1 Approach:deep learning· 1 Approach:graph neural network· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1 Approach:statistical model· 1

Frequent Co-Authors

Annalisa MarsicoiD· 2 shared Felix SteinbaueriD· 1 shared Gjergji KasneciiD· 1 shared Hui ChengiD· 1 shared Jian TangiD· 1 shared Marc HorlacheriD· 1 shared Maria A. WörheideiD· 1 shared Maria Colomé‐TatchéiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Annalisa MarsicoORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 30, 2026

RIBEX: Predicting and Explaining RNA Binding Across Structured and Intrinsically Disordered Regions (IDR)-rich Proteins

Samuele Firmani, Felix Steinbauer, Gjergji Kasneci…·Marc Horlacher

RIBEX improves RBP prediction by integrating sequence and interactome data, outperforming existing methods on IDR-rich and non-RBD proteins.

DOI 10.1093/bioinformatics/btag471

humanprotein sequence

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 17, 2024

Path-based reasoning in biomedical knowledge graphs with BioPathNet

Yue Hu, Svitlana Oleshko, Samuele Firmani…·Annalisa Marsico

BioPathNet improves link prediction in biomedical knowledge graphs by using path-based reasoning, outperforming existing methods and identifying novel drug indications and gene interactions.

7 citations

graph neural networkcontrastive learning

𝕏 PostBluesky