Author

T. M. Arefin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:structural biology· 2 Assay:bulk RNA-seq· 1 Assay:imaging· 1 Research Focus:spatial domain detection· 1 Approach:statistical model· 1

Frequent Co-Authors

C. H. Lee· 3 shared J. Zhang· 3 shared Z. Liang· 3 shared D. H. Turnbull· 1 shared F. Knoll· 1 shared H. Rallapalli· 1 shared L. Ying· 1 shared P. Walczak· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioengineering

C. H. Lee

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3 papers

Recent·Most cited

Towards reliable reconstruction of the mouse brain thalamocortical connectivity using diffusion MRI

T. M. Arefin, C. H. Lee, Z. Liang, H. Rallapalli, Y. Z. Wadghiri, D. H. Turnbull, J. Zhang

This study optimizes dMRI tractography for reliable reconstruction of the mouse brain thalamocortical network by evaluating imaging and tractography parameters using an atlas and tracer data.

bioRxiv · Dec 28, 2022 · PreprintBioengineering

Using Mesoscopic Tract-Tracing Data to Guide the Estimation of Fiber Orientation Distributions in the Mouse Brain from Diffusion MRI

Z. Liang, T. M. Arefin, C. H. Lee, J. Zhang

This study uses mesoscopic tract-tracing data to improve fiber orientation distribution estimation in mouse brains via deep learning, enhancing tractography specificity without sacrificing sensitivity.

bioRxiv · Jun 2, 2022Bioengineering

Virtual Mouse Brain Histology from Multi-contrast MRI via Deep Learning

Z. Liang, C. H. Lee, T. M. Arefin, Z. Dong, P. Walczak, S.-H. Shi, F. Knoll, Y. Ge, L. Ying, J. Zhang

This paper uses deep learning to estimate histological staining intensity from MRI signals, creating virtual histology maps of mouse brains with enhanced sensitivity and specificity.

bioRxiv · May 1, 2020Bioengineering