Author

T. Nishi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 7

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:chromatin & epigenetic regulation· 4 Assay:bulk RNA-seq· 2 Assay:ChIP-seq· 2 Organism:mouse· 2 Organism:plant (other)· 2 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

M. Yuda· 5 shared S. Iwanaga· 5 shared I. Kaneko· 4 shared Y. Murata· 2 shared D. Addo-Gyan· 1 shared E. Sora· 1 shared H. Demirhan· 1 shared H. Matsushita· 1 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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5 shared papersMicrobiology

M. Yuda

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Author profile →

7 papers

Recent·Most cited

Coordinated regulation of gene expression in Plasmodium female gametocytes by two transcription factors

Y. Murata, T. Nishi, I. Kaneko, S. Iwanaga, M. Yuda

This study identifies a novel transcription factor, PFG, that cooperates with AP2-FG to regulate gene expression in Plasmodium female gametocytes, affecting ookinete formation and gene activation.

bioRxiv · Apr 10, 2023 · PreprintMicrobiology

PbAP2-FG2 and AP2R-2 function together as a transcriptional repressor complex essential for Plasmodium female development

T. Nishi, I. Kaneko, S. Iwanaga, M. Yuda

This study identifies PbAP2-FG2 and AP2R-2 as a transcriptional repressor complex essential for female gametocyte development in Plasmodium berghei, showing their role in repressing target genes involved in gametocyte differentiation.

bioRxiv · Sep 22, 2022 · PreprintMicrobiology

Identification of a novel AP2 transcription factor in zygotes with an essential role in Plasmodium ookinete development.

T. Nishi, S. Iwanaga, I. Kaneko, M. Yuda

This study identifies AP2-Z as a critical transcription factor in Plasmodium zygotes that activates de novo transcription essential for ookinete development.

bioRxiv · Apr 11, 2022Microbiology

Targetome analysis of malaria sporozoite transcription factor AP2-Sp reveals its role as a master regulator

m. yuda, i. kaneko, y. murata, S. Iwanaga, t. nishi

The paper identifies AP2-Sp target genes in malaria sporozoites, revealing its role as a master regulator through transcriptional auto-activation and regulation of other TFs.

bioRxiv · Feb 23, 2022Microbiology

Chromosome splitting of Plasmodium berghei using the CRISPR/Cas9 system.

D. Addo-Gyan, H. Matsushita, E. Sora, T. Nishi, N. Shinzawa, M. Yuda, S. Iwanaga

This study splits chromosomes in Plasmodium berghei using CRISPR/Cas9 with telomere and centromere fragments, showing accurate segregation and no developmental impact.

bioRxiv · Nov 4, 2021Microbiology

Transmission network reconstruction for foot-and-mouth disease outbreaks incorporating farm-level covariates

S. M. Firestone, Y. Hayama, M. S. Y. Lau, T. Yamamoto, T. Nishi, R. Bradhurst, H. Demirhan, M. A. Stevenson, T. Tsutsui

This study modifies a Bayesian framework to reconstruct foot-and-mouth disease transmission networks by incorporating farm-level covariates, showing improved accuracy and insights into outbreak dynamics.

bioRxiv · Nov 8, 2019Microbiology

Reverse transcription-PCR using a Primer Set Targeting the 3D Region Detects Foot-and-Mouth Disease Virus with High Sensitivity

T. Nishi, T. Kanno, N. Shimada, K. Morioka, M. Yamakawa, K. Fukai

This study develops a new RT-PCR primer set (FM8/9) for detecting FMDV with higher sensitivity than existing methods.

bioRxiv · Apr 20, 2018Microbiology