Author

T. S. Shimizu

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Biology Disciplines

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Assay:fluorescence / live-cell microscopy· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Organism:C. elegans· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

A. C. Costa· 1 shared F. Avgidis· 1 shared G. J. Stephens· 1 shared J. M. Keegstra· 1 shared J. S. Parkinson· 1 shared K. Aoki· 1 shared K. Kamino· 1 shared L. Avery· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBiophysics

A. C. Costa

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3 papers

Recent·Most cited

BiophysicsbioRxivDec 4, 2022

Near-critical tuning of cooperativity revealed by spontaneous switching in a protein signalling array

J. M. Keegstra, F. Avgidis, Y. Mulla…·T. S. Shimizu

In vivo FRET measurements of Escherichia coli chemosensory array fluctuations reveal an allosteric system poised near criticality.

DOI 10.1038/s41567-025-03158-3

E. colifluorescence / live-cell microscopy

BiophysicsbioRxivPreprintMar 29, 2022

Optimal inference of molecular interactions in live FRET imaging

K. Kamino, N. Kadakia, K. Aoki…·T. Emonet

This paper introduces B-FRET, a Bayesian framework for inferring molecular interactions from live FRET imaging data, improving signal-to-noise ratio without additional measurements.

DOI 10.1101/2022.03.29.486267

bacteria (other)fluorescence / live-cell microscopy

BiophysicsbioRxivMar 24, 2019

Modeling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behavior across species

S. J. Helms, W. M. Rozemuller, A. C. Costa…·T. S. Shimizu

The paper models nematode motility transitions and finds species-specific variations in exploratory behavior linked to trade-offs between exploration and exploitation.

DOI 10.1098/rsif.2019.0174

C. elegansmouse