HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
Simon Rio, Sophie Abdallah, Théo Durand, Angélique D’Hont, Olivier Garsmeur
HaploCharmer is a Snakemake workflow for read-scale haplotype calling in polyploids, validated on sugarcane and Saccharum data, identifying high-quality haplotypes with low false positives.
Peer Community Journal · Sep 25, 2025Peer-reviewedBioinformatics