Author

Sophie Abdallah

Centre de Coopération Internationale en Recherche Agronomique pour le DéveloppementORCID 0009-0000-7014-8826Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:plant (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Angélique D’HontiD· 1 shared Olivier GarsmeuriD· 1 shared Simon RioiD· 1 shared Théo Durand· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Angélique D’HontORCID

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1 paper

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedSep 25, 2025

HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids

Simon Rio, Sophie Abdallah, Théo Durand…·Olivier Garsmeur

HaploCharmer is a Snakemake workflow for read-scale haplotype calling in polyploids, validated on sugarcane and Saccharum data, identifying high-quality haplotypes with low false positives.

1 citation

plant (other)whole-genome sequencing

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