Author

Thierno Barry

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Florian LevetiD· 2 shared Rémi GallandiD· 2 shared Xareni Galindo· 2 shared Anne BéghiniD· 1 shared Charlotte RivièreiD· 1 shared Edgar Lefevre· 1 shared Emmanuel BouilholiD· 1 shared Jean‐Baptiste SibaritaiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersBioinformatics

Florian LevetORCID

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2 papers

Recent·Most cited

3D Nuclei Segmentation by Combining GAN Based Image Synthesis and Existing 3D Manual Annotations

Xareni Galindo, Thierno Barry, Pauline Guyot, Charlotte Rivière, Rémi Galland, Florian Levet

The paper presents a method to segment 3D nuclei in low signal-to-noise ratio images using a combination of 2D Stardist and a conditional GAN to generate synthetic 3D masks.

International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC) · Jan 1, 2024Peer-reviewedBioinformatics

SalienceNet: an unsupervised Image-to-Image translation method for nuclei saliency enhancement in microscopy images

Emmanuel Bouilhol, Edgar Lefevre, Thierno Barry, Florian Levet, Anne Béghin, Virgile Viasnoff, Xareni Galindo, Rémi Galland, Jean‐Baptiste Sibarita, Macha Nikolski

SalienceNet enhances nuclei saliency in low-light microscopy images, improving segmentation accuracy by 30% with Otsu thresholding and 26% with StarDist.

bioRxiv · Oct 27, 2022 · PreprintBioinformatics