Author

Emmanuel Bouilhol

Centre National de la Recherche ScientifiqueORCID 0000-0002-6831-356XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Macha NikolskiiD· 3 shared Anca Flavia SavulescuiD· 2 shared Benjamin DartiguesiD· 2 shared Edgar Lefevre· 2 shared Robyn Brackin· 2 shared Anne BéghiniD· 1 shared Edgar R. GomesiD· 1 shared Florian LevetiD· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersBioinformatics

Macha NikolskiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 27, 2022

SalienceNet: an unsupervised Image-to-Image translation method for nuclei saliency enhancement in microscopy images

Emmanuel Bouilhol, Edgar Lefevre, Thierno Barry…·Macha Nikolski

SalienceNet enhances nuclei saliency in low-light microscopy images, improving segmentation accuracy by 30% with Otsu thresholding and 26% with StarDist.

1 citation

imagingdeep learning

𝕏 PostBluesky

BioinformaticsBiological ImagingPeer-reviewedJan 1, 2022

DeepSpot: a deep neural network for RNA spot enhancement in smFISH microscopy images

Emmanuel Bouilhol, Anca Flavia Savulescu, Edgar Lefevre…·Macha Nikolski

DeepSpot enhances RNA spots in smFISH images using deep learning, enabling automated detection without manual parameter tuning and achieving over 97% accuracy.

21 citations

mousespatial transcriptomics

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Systems BiologybioRxivPreprintJan 31, 2019

DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution

Anca Flavia Savulescu, Robyn Brackin, Emmanuel Bouilhol…·Musa M. Mhlanga

DypFISH quantitatively investigates spatial and temporal subcellular localization of RNA and protein using micropatterning and fluorescence microscopy, revealing reproducible patterns and dynamics.

5 citations

spatial transcriptomicsprotein structure

𝕏 PostBluesky