Fast, scalable, and statistically robust cell extraction from large-scale neural calcium imaging datasets
Fatih Dinç, Hakan Inan, Oscar Hernandez, Claudia Schmuckermair, Omer Hazon, Tugce Tasci, Biafra Ahanonu, Yanping Zhang, Jérôme A. Lecoq, Simon Haziza, Mark J. Wagner, Murat A. Erdogdu, Mark J. Schnitzer
EXTRACT, a GPU-based cell extraction method using one-sided Huber robust regression, processed 199 Allen Brain Observatory sessions (~12 TB) in a day and gave cleaner traces than CAIMAN or CNMF-E.
bioRxiv · Mar 24, 2021 · PreprintNeuroscience✦ In-depth digest