Author

V. Rizzi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:protein folding & dynamics· 3 Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:machine learning (classical)· 1 Approach:mechanistic / dynamical model· 1 Assay:multiome· 1

Frequent Co-Authors

F. L. Gervasio· 3 shared N. Ansari· 2 shared S. Aureli· 2 shared A. Borsatto· 1 shared E. Gianquinto· 1 shared F. Bellina· 1 shared M. Parrinello· 1 shared P. Carloni· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 11 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiophysics

F. L. Gervasio

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Investigating Ligand-Mediated Conformational Dynamics of Pre-miR21: A Machine-Learning-Aided Enhanced Sampling Study

S. Aureli, F. Bellina, V. Rizzi, F. L. Gervasio

This study uses machine learning to simulate conformational changes in pre-miR21, showing how L50 affects its structure and suggesting a computational platform for inhibitor screening.

bioRxiv · Jun 27, 2024Biophysics

SWISH-X, an expanded approach to detect cryptic pockets inproteins and at protein-protein interfaces

A. Borsatto, E. Gianquinto, V. Rizzi, F. L. Gervasio

SWISH-X identifies cryptic pockets in proteins and protein-protein interfaces by combining SWISH with OPES MultiThermal for improved prediction.

bioRxiv · Nov 3, 2023Biophysics

OneOPES, a combined enhanced sampling method to rule them all

V. Rizzi, S. Aureli, N. Ansari, F. L. Gervasio

The paper introduces OneOPES, a replica exchange method combining multi-replica simulations and CV-based enhanced sampling to improve phase space sampling in molecular dynamics.

bioRxiv · Mar 6, 2023Biophysics

Water-triggered, irreversible conformational change of SARS-CoV-2 main protease on passing from the solid state to aqueous solution

N. Ansari, V. Rizzi, P. Carloni, M. Parrinello

The paper shows that water molecules trigger an irreversible conformational change in SARS-CoV-2 main protease when transitioning from solid to aqueous state, leading to asymmetric subunit conformations.

bioRxiv · May 21, 2021Biophysics