Author

Vanessa Nakonecnij

University of Bonn

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:Arabidopsis· 1 Approach:Bayesian inference· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Jakob VanhoeferiD· 2 shared Jan HasenaueriD· 2 shared Aaron CallenbachiD· 1 shared Akira FunahashiiD· 1 shared Alexander MazeiniD· 1 shared Alina RenziD· 1 shared Anastasia P. NesterovaiD· 1 shared Anders RiuttaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersSystems Biology

Jakob VanhoeferORCID

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3 papers

Recent·Most cited

Efficient Bayesian inference for ordinary differential equation models from experimental data with uncertain measurement times

Jakob Vanhoefer, Vanessa Nakonecnij, Nadine Binder, Jan Hasenauer

This paper presents a Bayesian framework for parameter inference in ODE models that accounts for uncertain measurement times, improving reliability and efficiency in dynamic modeling.

bioRxiv · May 13, 2026 · PreprintSystems Biology

Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity

Aaron Callenbach, Domagoj Dorešić, Robert Düster, Vanessa Nakonecnij, Erika Dudkin, Matthias Geyer, Jan Hasenauer

The paper uses mathematical modeling to show P-TEFb phosphorylates CTD repeats with local cooperativity but no directional bias.

bioRxiv · Dec 2, 2025 · PreprintSystems Biology

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert D. Phair, Aurelio Orta Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Márcio Luís Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, , Özgün Babur

The paper describes the development of a computational knowledge repository, the COVID-19 Disease Map, which curates SARS-CoV-2 virus-host interaction mechanisms and provides tools for their analysis and application.

Molecular Systems Biology · Oct 1, 2021Peer-reviewedSystems Biology