Author

Erika Dudkin

University of BonnORCID 0000-0002-9649-0029Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Jan HasenaueriD· 2 shared Matthias GeyeriD· 2 shared Aaron CallenbachiD· 1 shared Alex K. ShalekiD· 1 shared Allon WagneriD· 1 shared Andreas FeißtiD· 1 shared Anna C. AschenbrenneriD· 1 shared Arik HorneiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersSystems Biology

Jan HasenauerORCID

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2 papers

Recent·Most cited

Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity

Aaron Callenbach, Domagoj Dorešić, Robert Düster, Vanessa Nakonecnij, Erika Dudkin, Matthias Geyer, Jan Hasenauer

The paper uses mathematical modeling to show P-TEFb phosphorylates CTD repeats with local cooperativity but no directional bias.

bioRxiv · Dec 2, 2025 · PreprintSystems Biology

Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease

Kevin E. Bassler, Wataru Fujii, Theodore S. Kapellos, Arik Horne, Benedikt Reiz, Erika Dudkin, Malte D. Luecken, Nico Reusch, Collins Osei-Sarpong, Stefanie Warnat‐Herresthal, Allon Wagner, Lorenzo Bonaguro, Patrick Günther, Carmen Pizarro, Tina Schreiber, , Joachim Ludwig Schultze

This study uses single-cell RNA-seq and computational methods to analyze macrophage states in COPD patients, revealing transcriptional changes and metabolic shifts associated with the disease.

bioRxiv · May 28, 2020 · PreprintSystems Biology