Author

Xiangting Jia

Northwestern Polytechnical University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Research Focus:spatial domain detection· 3 Assay:spatial transcriptomics· 3 Approach:deep learning· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Dongmin ZhaoiD· 4 shared Jialuo XuiD· 4 shared Xingyi LiiD· 4 shared Xuequn ShangiD· 4 shared Gaoyuan Du· 3 shared Junnan ZhuiD· 3 shared Yiqi CheniD· 2 shared Chang Liu· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersBioinformatics

Dongmin ZhaoORCID

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4 papers

Recent·Most cited

Structure-aware deep learning predicts influenza antigenicity and guides vaccine strain recommendation

Xingyi Li, Chunyan Zhou, Kexin Xiao, Jialuo Xu, Xiangting Jia, Dongmin Zhao, Lei Chen, Yue Li, Jiajie Peng, Junnan Zhu, Yan Liu, Xuequn Shang, Huihui Kong

This paper introduces Vir3D, a structure-aware deep learning model that predicts influenza antigenicity and improves vaccine strain selection by incorporating 3D structural information from amino acid sequences.

bioRxiv · Aug 7, 2026 · PreprintBioinformatics

Cell Type-informed Characterization of Spatial Niches from Spatial Multimodal and Multi-omics Data

Gaoyuan Du, Jialuo Xu, Xinrong Wei, Chang Liu, Dongmin Zhao, Xiangting Jia, Xingyi Li, Xuequn Shang

SpaNECT is a framework for characterizing cell niches from spatial multimodal and multi-omics data, outperforming existing methods in diverse biological contexts.

bioRxiv · May 13, 2026 · PreprintBioinformatics

A Multimodal Graph Learning Framework for Versatile Spatial Transcriptomics Analysis with SpatialModal

Xingyi Li, Dongmin Zhao, Xiangting Jia, Gaoyuan Du, Jialuo Xu, Qi Yang, Yiqi Chen, Yingfu Wu, Junnan Zhu, Wei Feng, Min Li, Xuequn Shang

SpatialModal integrates gene expression and histological images in spatial transcriptomics to improve spatial analysis and domain identification.

bioRxiv · May 11, 2025 · PreprintBioinformatics

Spatial geometry-aware deep learning for deciphering tissue structure from spatially resolved transcriptomics

Xingyi Li, Xiangting Jia, Dongmin Zhao, Jialuo Xu, Gaoyuan Du, Qi Yang, Yiqi Chen, Yingfu Wu, Junnan Zhu, Wei Feng, Xuequn Shang

SpatialGEO improves identification of spatial regions in spatial transcriptomics data and reveals biological insights in tumor microenvironments and mouse development.

bioRxiv · May 11, 2025 · PreprintBioinformatics