Author

Xunuo Zhu

Zhejiang University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Research Focus:clustering· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Guoxin CaiiD· 3 shared Xun GuiD· 3 shared Binbin ZhouiD· 2 shared Bo YangiD· 2 shared Jie Liu· 2 shared Jingqi ZhouiD· 2 shared Wenyi ZhaoiD· 2 shared Xuheng Zhou· 2 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Guoxin CaiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Computational reconstruction of hierarchical cis-regulatory networks reveals synergistic transcription control and disease-associated rewiring

Xunuo Zhu, Xuheng Zhou, Yufang Zhang, Guoxin Cai, Weidong Zhao, Binbin Zhou, Jingqi Zhou, Zefang Tang, Jie Liu, Qingqing Zhu, Ji Cao, Bo Yang, Xun Gu, Zhan Mei Zhou

ORIGAMI reconstructs cis-regulatory networks using multi-omics data and deep learning, revealing synergistic transcription control and disease-associated rewiring.

bioRxiv · Jun 26, 2026 · PreprintBioinformatics

CHORD: a framework for cross-species single-cell integration across gene, cell and cell-type levels

Yitao Lin, Xunuo Zhu, Xuheng Zhou, Xue Zhang, Guoxin Cai, Wenyi Zhao, Jingqi Zhou, Jie Liu, Qiang Zhu, Menghan Zhang, Binbin Zhou, Xun Gu, Zhan Mei Zhou

CHORD integrates cross-species single-cell transcriptomic data to learn gene, cell, and cell-type representations, enabling cell-type annotation and cross-species comparison of developmental and phenotypic patterns.

bioRxiv · Apr 22, 2026 · PreprintBioinformatics

TopicVI: A Knowledge-guided deep interpretable model for resolving context-specific gene programs

Guoxin Cai, Wenyi Zhao, Xunuo Zhu, Yitao Lin, Binbin Zhou, Jin Cao, Q. Peter He, Bo Yang, Xun Gu, Xushen Xiong, Zhize Zhou

TopicVI identifies context-specific gene programs in single-cell and spatial transcriptomics data by integrating biological knowledge with data-driven refinement.

bioRxiv · Apr 10, 2026 · PreprintBioinformatics