Author

Yael Baran

Weizmann Institute of Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Research Focus:dimensionality reduction· 2 Assay:Hi-C· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Amos TanayiD· 3 shared Yaniv LublingiD· 3 shared Aviezer LifshitziD· 2 shared Michael Hoichman· 2 shared Netta Mendelson CoheniD· 2 shared Akhiad Bercovich· 1 shared Amir GiladiiD· 1 shared Arnau Sebé-PedrósiD· 1 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Amos TanayORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MetaCell: analysis of single cell RNA-seq data using k-NN graph partitions

Yael Baran, Akhiad Bercovich, Arnau Sebé-Pedrós, Yaniv Lubling, Amir Giladi, Elad Chomsky, Zohar Meir, Michael Hoichman, Aviezer Lifshitz, Amos Tanay

MetaCell partitions scRNA-seq data into homogeneous metacells to address sparsity, enabling clustering and gene expression analysis without enforcing global structure.

Genome biology · Oct 11, 2019Peer-reviewedBioinformatics

SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices

Netta Mendelson Cohen, Pedro Olivares‐Chauvet, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Michael Hoichman, Amos Tanay

SHAMAN provides a method for analyzing Hi-C data without predefined resolution, minimizing biases by randomizing contact matrices and assessing enrichment.

bioRxiv · Sep 12, 2017 · PreprintBioinformatics

Cell cycle dynamics of chromosomal organisation at single-cell resolution

Takashi Nagano, Yaniv Lubling, Csilla Várnai, Carmel Dudley, Wing‐Kit Leung, Yael Baran, Netta Mendelson Cohen, Steven Wingett, Peter Fraser, Amos Tanay

This study uses single-cell Hi-C to analyze chromosomal organization dynamics across the cell cycle, revealing distinct cell cycle-dependent changes in chromosomal compartments, TADs, and loops.

Nature · Jul 1, 2017Peer-reviewedGenomics