Author

Yitong Shen

Hong Kong University of Science and Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:deep learning· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:long-read sequencing· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Beifang LuiD· 1 shared Jiadai HuangiD· 1 shared Letong XuiD· 1 shared Lisheng ZhangiD· 1 shared Runsheng LiiD· 1 shared Shenghai SheniD· 1 shared Xin DengiD· 1 shared Yizhou ZhangiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperMicrobiology

Beifang LuORCID

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1 paper

Recent·Most cited

Quantitative RNA pseudouridine landscape reveals dynamic modification patterns and evolutionary conservation across bacterial species

Letong Xu, Shenghai Shen, Yizhou Zhang, Zhihao Guo, Beifang Lu, Jiadai Huang, Runsheng Li, Yitong Shen, Lisheng Zhang, Xin Deng

This study maps pseudouridine modifications across bacterial species, revealing dynamic patterns and evolutionary conservation, and develops a deep learning framework for predicting modified sites.

bioRxiv · May 13, 2025Microbiology