Author

Yukai Xiao

Argonne National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Ravi MadduriiD· 2 shared Alex M. CasellaiD· 1 shared Alex Rodriguez· 1 shared Alexis Rodriguez· 1 shared Amy J. MarkowitziD· 1 shared Arthur W. TogaiD· 1 shared Ben HeavneriD· 1 shared Carl KesselmaniD· 1 shared

Activity by Year

2020-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersNeuroscience

Ravi MadduriORCID

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2 papers

Recent·Most cited

MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline

Joseph Y. Moon, Peer‐Timo Bremer, Pratik Mukherjee, Amy J. Markowitz, Eva M. Palacios, Lanya Tianhao Cai, Alexis Rodriguez, Yukai Xiao, Geoffrey A. Manley, Ravi Madduri

MaPPeRTrac streamlines and accelerates large-scale diffusion MRI tractography by automating the pipeline and leveraging HPC resources.

bioRxiv · Dec 23, 2020 · PreprintNeuroscience

Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data Across 27 Tissue Types

Cory C. Funk, Alex M. Casella, Segun C. Jung, Matthew A. Richards, Alex Rodriguez, Paul T. Shannon, Rory Donovan-Maiye, Ben Heavner, Kyle Chard, Yukai Xiao, Gustavo Glusman, Nilüfer Ertekin‐Taner, Todd Eliot Golde, Arthur W. Toga, Leroy Hood, , Seth A. Ament

The paper develops a workflow to identify transcription factor binding sites across 27 human tissues using DNase-seq data, resulting in a comprehensive footprint atlas with high-quality predictions.

Cell Reports · Aug 1, 2020Peer-reviewedBioinformatics