Author

Z. Boldogkoi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 3 Research Focus:cell type annotation· 2 Assay:CITE-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

B. Kakuk· 4 shared D. Tombacz· 4 shared G. Gulyas· 4 shared I. Prazsak· 4 shared Z. Csabai· 3 shared A. Dormo· 2 shared A. Dörmo· 2 shared D. Ruzek· 2 shared

Activity by Year

2023-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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4 shared papersMicrobiology

B. Kakuk

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Exploring the Transcriptomic Profile of Human Monkeypox Virus via CAGE and Native RNA Sequencing Approaches

Z. Boldogkoi, G. A. Nagy, D. Tombacz, I. Prazsak, Z. Csabai, A. Dörmo, G. Gulyas, G. Kemenesi, G. E. Toth, J. Holoubek, D. Ruzek, B. Kakuk

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

bioRxiv · Apr 29, 2024Microbiology

Cross-Comparison of Gut Metagenomic Profiling Strategies

G. Gulyas, B. Kakuk, A. Dormo, T. Jaray, I. Prazsak, Z. Csabai, M. M. Henkrich, Z. Boldogkoi, D. Tombacz

This study compares gut metagenomic profiling strategies across multiple stages and introduces an optimized pipeline and software tool for reliable and comparable results.

bioRxiv · Nov 25, 2023Microbiology

KSHV 3.0: A State-of-the-Art Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Transcriptome Using Cross-Platform Sequencing

I. Prazsak, D. Tombacz, A. Fülöp, G. Torma, G. Gulyas, A. Dörmo, B. Kakuk, L. McKenzie Spires, Z. Toth, Z. Boldogkoi

This study enhances the annotation of the KSHV transcriptome using long-read and short-read sequencing, identifying novel transcripts and improving existing annotations.

bioRxiv · Sep 21, 2023Microbiology

In-depth Temporal Transcriptome Profiling of Monkeypox and Host Cells using Nanopore Sequencing

B. Kakuk, A. Dormo, Z. Csabai, G. Kemenesi, J. Holoubek, D. Ruzek, I. Prazsak, V. E. Dani, B. Denes, G. Torma, F. Jakab, G. E. Toth, F. V. Foldes, B. Zana, Z. Lanszki, , Z. Boldogkoi

This study uses Oxford Nanopore long-read RNA-Sequencing to profile the transcriptome of monkeypox virus and host cells, revealing gene expression dynamics and host transcriptomic changes.

Scientific Data · May 9, 2023Peer-reviewedMicrobiology