Author

Zachary Carpenter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Assay:protein structure· 2 Research Focus:benchmarking· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Daniel KovtuniD· 2 shared Emanuele RossiiD· 2 shared Emine KüçükbenliiD· 2 shared Gabriele CorsoiD· 2 shared Guoqing ZhouiD· 2 shared Hannes StärkiD· 2 shared Luca NaefiD· 2 shared Mehmet AkdeliD· 2 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBiochemistry

Daniel KovtunORCID

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2 papers

Recent·Most cited

PLINDER: The protein-ligand interactions dataset and evaluation resource

Janani Durairaj, Yusuf O. Adeshina, Zhonglin Cao, Xuejin Zhang, Vladimiras Oleinikovas, Thomas J. Duignan, Zachary D. McClure, Xavier Robin, Gabriel Studer, Daniel Kovtun, Emanuele Rossi, Guoqing Zhou, Srimukh Prasad Veccham, Clemens Isert, Yuxing Peng, , Luca Naef

PLINDER provides a large, annotated PLI dataset with diverse annotations and improved evaluation splits to better assess computational methods for drug design.

bioRxiv · Jul 17, 2024 · PreprintBiochemistry

PINDER: The protein interaction dataset and evaluation resource

Daniel Kovtun, Mehmet Akdel, Alexander Goncearenco, Guoqing Zhou, Graham T. Holt, David Baugher, Dejun Lin, Yusuf O. Adeshina, Thomas Castiglione, Xiaoyun Wang, Céline Marquet, Matt McPartlon, Tomas Geffner, Emanuele Rossi, Gabriele Corso, , Luca Naef

PINDER provides a benchmark dataset for evaluating protein-protein interaction docking models, revealing overestimation of performance on leaky test sets and showing improvements with interface-clustered training.

bioRxiv · Jul 17, 2024 · PreprintBioinformatics