Author

Graham T. Holt

Duke UniversityORCID 0000-0003-3354-9748Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:protein design· 2 Assay:protein structure· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Adegoke A. OjewoleiD· 1 shared Adi Xiyal MukundiD· 1 shared Alexander GoncearencoiD· 1 shared Anna U. LowegardiD· 1 shared Bruce Randall DonaldiD· 1 shared Céline MarquetiD· 1 shared Daniel KovtuniD· 1 shared David Baugher· 1 shared

Activity by Year

2018-2024 · peak 1/yr

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10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Adegoke A. OjewoleORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 17, 2024

PINDER: The protein interaction dataset and evaluation resource

Daniel Kovtun, Mehmet Akdel, Alexander Goncearenco…·Luca Naef

PINDER provides a benchmark dataset for evaluating protein-protein interaction docking models, revealing overestimation of performance on leaky test sets and showing improvements with interface-clustered training.

31 citations

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsJournal of Computational ChemistryPeer-reviewedOct 14, 2018

OSPREY 3.0: Open-Source Protein Redesign for You, with Powerful New Features

Mark A. Hallen, Jeffrey W. Martin, Adegoke A. Ojewole…·Bruce Randall Donald

OSPREY 3.0 improves protein design software with faster algorithms, GPU support, and a Python interface, showing accurate mutation effect predictions on protein-protein binding.

72 citations

protein structurestatistical model

𝕏 PostBluesky