Author

Zachary Markham

The University of Texas Southwestern Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:mouse· 1 Assay:multiome· 1 Research Focus:perturbation response prediction· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Boxun LiiD· 1 shared Gary C. HoniD· 1 shared L H Wang· 1 shared Landon Vu NguyeniD· 1 shared Nikhil V Munshi· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Boxun LiORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

PEPR-GNN: Perturbation-Enhancer-Promoter-RNA Graph Neural Networks for Multiome Perturb-Seq modeling of regulomes

Zachary Markham, Boxun Li, Landon Vu Nguyen, L H Wang, Nikhil V Munshi, Gary C. Hon

The paper introduces PEPR-GNN, a graph neural network framework to model regulome responses during genetic perturbations using Multiome Perturb-Seq data.

bioRxiv · May 6, 2026 · PreprintGenomics