Ze-Yu Kuang

Protein large language model assisted one-to-one gene homology mapping in cross-species single-cell transcriptome integration

The paper develops a protein large language model-based method to improve gene homology mapping in cross-species single-cell transcriptome integration, increasing homology pairs and identifying novel cell-type markers.

Hi-Compass resolves cell-type chromatin interactions by single-cell and spatial ATAC-seq data across biological scales

Hi-Compass predicts chromatin organization from single-cell and spatial ATAC-seq data, outperforming existing methods and enabling analysis across biological scales.