Author

An Liu

Peking University Cancer Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 3 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:Hi-C· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Hua‐Jun WuiD· 3 shared Futing Lai· 2 shared Kangwen Cai· 2 shared Ming Xu· 2 shared Nana WeiiD· 2 shared Wen-Jie Jiang· 2 shared Xiaoqi ZhengiD· 2 shared Yuanchen Sun· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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3 shared papersBioinformatics

Hua‐Jun WuORCID

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Author profile →

4 papers

Recent·Most cited

Harmonizing single cell 3D genome data with STARK and scNucleome

Wen-Jie Jiang, Kangwen Cai, Sun Yuanchen, An Liu, H P Zhu, RuiXiang Gao, Chunge Zhong, Nana Wei, Futing Lai, Teng Fei, Yujuan Wang, Xiaoqi Zheng, Ming Xu, Hua‐Jun Wu

The paper introduces STARK, a toolkit for processing sc3DG-seq data, benchmarks 11 technologies, and establishes scNucleome as a resource for 3D genome research.

Genome biology · Jan 21, 2026Peer-reviewedBioinformatics

Hi-Compass resolves cell-type chromatin interactions by single-cell and spatial ATAC-seq data across biological scales

Yuanchen Sun, Wenjie Jiang, Kang-Wen Cai, Na-Na Wei, Fu-Ting Lai, Rui-Xiang Gao, Ze-Yu Kuang, Jia-Lu Zhou, An Liu, Han-Wen Zhu, Ming Xu, Hua‐Jun Wu

Hi-Compass predicts chromatin organization from single-cell and spatial ATAC-seq data, outperforming existing methods and enabling analysis across biological scales.

bioRxiv · May 14, 2025 · PreprintBioinformatics

Genome-enabled stilbenoid gene cluster discovery in Pleuropterus multiflorus

Jinzhu Jiang, Xianju Liu, Yi Wang, Zhenchang Liang, An Liu

The paper identifies a novel stilbenoid biosynthetic gene cluster in Pleuropterus multiflorus using genome sequencing and analysis, revealing key enzymes and regulatory mechanisms.

bioRxiv · Dec 13, 2024 · PreprintMolecular Biology

CellPatch: a Highly Efficient Foundation Model for Single-Cell Transcriptomics with Heuristic Patching

Hanwen Zhu, Yushun Yuan, Jiyuan Yang, Kangwen Cai, Nana Wei, Senxin Zhang, Lu Wang, Wen-Jie Jiang, Yuanchen Sun, An Liu, Futing Lai, Yujuan Wang, Zeyu Ma, Xiaoqi Zheng, Hua‐Jun Wu

CellPatch is a lightweight foundation model for single-cell transcriptomics that achieves state-of-the-art performance with low computational costs.

bioRxiv · Nov 15, 2024 · PreprintBioinformatics