Author

Ming Xu

Chinese Academy of Medical Sciences & Peking Union Medical College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1 Cell Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Assay:metabolomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

An Liu· 2 shared Hua‐Jun WuiD· 2 shared Allyson K. PalmeriD· 1 shared Bryan Thomas PiatkowskiiD· 1 shared C Yang· 1 shared Christina L. Inman· 1 shared Chunge ZhongiD· 1 shared David B. AllisoniD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

An Liu

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Buffered sweat microfluidics with AI-enabled translation for clinically actionable blood urea estimation and renal risk stratification

Jiahao Zhang, Zhengquan Shen, Ming Xu, Yukun Ge, Xi Ren, Genlin Liu, Xiuwei Zhang, Simian Fu, C Yang, Minghui Long, Shu Li, Gaozhi P Mo, Yi Gong, Nan Li, Peiyu Ma, , Yunlong Zhao

This paper develops a wearable microfluidic patch with AI to estimate blood urea from sweat, enabling non-invasive renal monitoring with high accuracy.

bioRxiv · Jun 18, 2026 · PreprintBiophysics

Harmonizing single cell 3D genome data with STARK and scNucleome

Wen-Jie Jiang, Kangwen Cai, Sun Yuanchen, An Liu, H P Zhu, RuiXiang Gao, Chunge Zhong, Nana Wei, Futing Lai, Teng Fei, Yujuan Wang, Xiaoqi Zheng, Ming Xu, Hua‐Jun Wu

The paper introduces STARK, a toolkit for processing sc3DG-seq data, benchmarks 11 technologies, and establishes scNucleome as a resource for 3D genome research.

Genome biology · Jan 21, 2026Peer-reviewedBioinformatics

Senolytic-Resistant Senescent Cells Have a Distinct SASP Profile and Functional Impact: The Path to Developing Senosensitizers

Utkarsh Tripathi, Masayoshi Suda, Vagisha Kulshreshtha, Bryan Thomas Piatkowski, Allyson K. Palmer, Nino Giorgadze, Christina L. Inman, Nathan S. Gasek, Ming Xu, Kurt O. Johnson, Tamar Pirtskhalava, Selim Chaib, Larissa G. P. Langhi Prata, Yi Zhun Zhu, Renuka Kandhaya‐Pillai, , James L. Kirkland

Aging Cell · Dec 29, 2025Peer-reviewedCell Biology

Hi-Compass resolves cell-type chromatin interactions by single-cell and spatial ATAC-seq data across biological scales

Yuanchen Sun, Wenjie Jiang, Kang-Wen Cai, Na-Na Wei, Fu-Ting Lai, Rui-Xiang Gao, Ze-Yu Kuang, Jia-Lu Zhou, An Liu, Han-Wen Zhu, Ming Xu, Hua‐Jun Wu

Hi-Compass predicts chromatin organization from single-cell and spatial ATAC-seq data, outperforming existing methods and enabling analysis across biological scales.

bioRxiv · May 14, 2025 · PreprintBioinformatics

Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing

Xiao Wei, Fei Shen, Qiuping Zhang, Ning Liu, Yuping Zhang, Ming Xu, Shuo Liu, Yujun Zhang, Xiaoxue Ma, Weisheng Liu

This study analyzes genetic diversity in Chinese plum using whole-genome resequencing of 67 accessions, identifying four cultivar groups and highlighting the Yangtze River Basin as the origin center.

Tree Genetics & Genomes · Apr 21, 2021Peer-reviewedGenetics