Author

Zhenyu Liu

ByteDance (China)

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Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Assay:protein structure· 2 Research Focus:benchmarking· 1 Approach:diffusion model· 1 Research Focus:drug response / drug discovery· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Chengyue GongiD· 3 shared Hanyu ZhangiD· 3 shared Jiaqi GuaniD· 3 shared Wenzhi MaiD· 3 shared Wenzhi XiaoiD· 3 shared Xinshi CheniD· 3 shared Yuxuan ZhangiD· 3 shared Jinyuan SuniD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMolecular Biology

Chengyue GongORCID

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Author profile →

3 papers

Recent·Most cited

Protenix-v2: Broadening the Reach of Structure Prediction and Biomolecular Design

Yuxuan Zhang, Chengyue Gong, Jinyuan Sun, Jiaqi Guan, Milong Ren, Song Xue, Hanyu Zhang, Wenzhi Ma, Zhenyu Liu, Xinshi Chen, Wenzhi Xiao

Protenix-v2 improves structure prediction and biomolecular design, achieving higher success rates in antibody-antigen and GPCR target tasks, with high developability and diversity in resulting hits.

bioRxiv · Apr 11, 2026 · PreprintMolecular Biology

Protenix-v1: Toward High-Accuracy Open-Source Biomolecular Structure Prediction

Protenix Team, Yuxuan Zhang, Chengyue Gong, Hanyu Zhang, Wenzhi Ma, Zhenyu Liu, Xinshi Chen, Jiaqi Guan, Lan Wang, Yanping Yang, Wenzhi Xiao

Protenix-v1 is an open-source biomolecular structure prediction model that outperforms AlphaFold3 with the same training data cutoff, offering improved accuracy and new features for real-world applications.

bioRxiv · Feb 22, 2026 · PreprintBioinformatics

PXDesign: Fast, Modular, and Accurate De Novo Design of Protein Binders

Protenix Team, Milong Ren, Jinyuan Sun, Jiaqi Guan, Cong Liu, Chengyue Gong, Y.X. Wang, Lan Wang, Qixu Cai, Wenzhi Ma, Yuxuan Zhang, Zhenyu Liu, Hanyu Zhang, Xinshi Chen, Wenzhi Xiao

PXDesign achieves high hit rates for protein binder design by combining generative models and filtering strategies, validated experimentally and made publicly available.

bioRxiv · Aug 15, 2025 · PreprintMolecular Biology