Author

Ziye Wang

Fudan University

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Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Assay:metagenomics· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Ronghui YouiD· 2 shared Shanfeng ZhuiD· 2 shared Fengzhu SuniD· 1 shared Kunpeng Liu· 1 shared Pingqin Huang· 1 shared Qiqige Wuyun· 1 shared Wei Zheng· 1 shared Yuhao YiiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Ronghui YouORCID

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2 papers

Recent·Most cited

Effective structure-aware protein alignment via residue-level contrastive learning

Ronghui You, Ziye Wang, Kunpeng Liu, Wei Zheng, Qiqige Wuyun, Yuhao Yi, Shanfeng Zhu

CLAlign improves protein alignment by using contrastive learning to generate structure-aware embeddings, outperforming both unsupervised and sequence-based methods.

bioRxiv · Mar 9, 2024 · PreprintBioinformatics

MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities

Ziye Wang, Pingqin Huang, Ronghui You, Fengzhu Sun, Shanfeng Zhu

MetaBinner improves metagenomic binning by integrating multiple features and SCG information, outperforming existing methods on simulated and real datasets.

Genome biology · Jan 6, 2023Peer-reviewedBioinformatics