Ziye Wang

SCGBinner improves long-read metagenomic binning by using single-copy gene guided contrastive learning, outperforming existing methods on real-world datasets and recovering novel microbial species.

This paper organizes a community challenge to develop automated virus taxonomy classification tools and evaluates their performance on a combined dataset of expert-curated and metagenomic sequences.

PLMSearch uses a protein language model to perform fast and accurate homologous protein sequence search, improving sensitivity over traditional methods while matching structure search performance.