Author

Pingqin Huang

Fudan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:genome assembly· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Fengzhu SuniD· 2 shared Ronghui YouiD· 2 shared Shanfeng ZhuiD· 2 shared Aaron E. DarlingiD· 1 shared Adrian FritziD· 1 shared Alessio MilaneseiD· 1 shared Alexandru Cristian· 1 shared Alexey A. GurevichiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Fengzhu SunORCID

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2 papers

Recent·Most cited

MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities

Ziye Wang, Pingqin Huang, Ronghui You, Fengzhu Sun, Shanfeng Zhu

MetaBinner improves metagenomic binning by integrating multiple features and SCG information, outperforming existing methods on simulated and real datasets.

Genome biology · Jan 6, 2023Peer-reviewedBioinformatics

Critical Assessment of Metagenome Interpretation - the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey A. Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, , Till Strowig

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

Nature Methods · Apr 1, 2022Peer-reviewedBioinformatics