Author

Ziye Xu

Duke University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Andrew McKinneyiD· 1 shared Benjamin N. Taylor· 1 shared Bin Zhu· 1 shared Court HulliD· 1 shared Eun Young Song· 1 shared Haide CheniD· 1 shared Jiaye CheniD· 1 shared Jiong LiuiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperNeuroscience

Andrew McKinneyORCID

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2 papers

Recent·Most cited

Spatial Total RNA Sequencing of Formalin-Fixed Paraffin Embedded Tissues by spRandom-seq

Yuan Liao, Jiaye Chen, Shunji Zhang, Junbing Chen, Yuexiao Lyu, Bin Zhu, Haide Chen, Yuyi Zhu, Ling Dong, Qian Liang, Jiong Liu, Ziye Xu, Yu‐Sheng Chen, Yongcheng Wang

This paper introduces spRandom-seq, a spatial RNA sequencing method for FFPE tissues, which captures both host and microbial RNAs with higher efficiency than oligo(dT)-based methods.

Small · Jul 21, 2026Peer-reviewedGenomics

Coordinated cerebellar climbing fiber activity signals learned sensorimotor predictions

William Heffley, Eun Young Song, Ziye Xu, Benjamin N. Taylor, Mary Anne Hughes, Andrew McKinney, Mati Joshua, Court Hull

This study investigates cerebellar climbing fiber activity in mice during motor learning, finding that CFs are preferentially driven by task parameters predicting reward outcomes, suggesting a role in learned sensorimotor predictions.

Nature Neuroscience · Sep 12, 2018Peer-reviewedNeuroscience