Author

Zongyi Geng

Beijing Institute of genome research, Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Assay:DNA methylation· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1

Frequent Co-Authors

Lun LiiD· 2 shared Rongye YeiD· 2 shared Shuhui SongiD· 2 shared Yi Wang· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Lun LiORCID

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2 papers

Recent·Most cited

Language-guided domain adaptation improves protein sequence rep-resentations for antimicrobial resistance analysis

Rongye Ye, Lun Li, Zongyi Geng, Shuhui Song

BacLLM improves protein sequence representations for antimicrobial resistance analysis by integrating functional knowledge and enhancing resistance gene identification and mechanism prediction.

bioRxiv · Nov 5, 2026 · PreprintBioinformatics

InfluProto: Predicting Cross-Species Transmission of Influenza A Virus via Prototype Learning

Zongyi Geng, Lun Li, Rongye Ye, Yi Wang, Shuhui Song

InfluProto predicts cross-species transmission of influenza A virus using prototype learning, showing high accuracy in host classification and detecting reassortment effects.

bioRxiv · Oct 12, 2026 · PreprintMicrobiology