Rongye Ye

BacLLM improves protein sequence representations for AMR analysis by integrating functional knowledge, enhancing resistance-gene identification and mechanism prediction.

InfluProto predicts cross-species transmission of influenza A virus using prototype learning, showing high accuracy in host classification and detecting reassortment effects.

Influ-BERT improves IAV subtype identification by using domain-adaptive pretraining and achieves high F1-scores across underrepresented subtypes.