Author

Forrest Kim

University of California San DiegoORCID 0000-0002-3141-4447Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Edwin HuangiD· 2 shared Jill P. MesiroviD· 2 shared Michael M. ReichiD· 2 shared Thorin T. TaboriD· 2 shared Bhargavi DameracharlaiD· 1 shared Daniel J BlankenbergiD· 1 shared Daniel SchreyeriD· 1 shared Devika Torvi· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Edwin HuangORCID

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2 papers

Recent·Most cited

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis

Michael M. Reich, Thorin T. Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Edwin Huang, Helga Thorvaldsdóttir, Daniel J Blankenberg, Jill P. Mesirov

The paper introduces g2nb, a notebook environment integrating bioinformatics platforms into a unified interface for genomics analysis.

Journal of Bioinformatics and Systems Biology · Jan 1, 2025Peer-reviewedBioinformatics

AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes

Jens Luebeck, Edwin Huang, Forrest Kim, Ted Liefeld, Bhargavi Dameracharla, Rohil Ahuja, Daniel Schreyer, Gino Prasad, Michał Adamaszek, Rishaan Kenkre, Tushar Agashe, Devika Torvi, Thorin T. Tabor, Mădălina Giurgiu, So Yeon Kim, , Vineet Bafna

AmpliconSuite identifies focal amplifications in cancer genomes, showing ecDNA has higher copy numbers and stronger oncogene enrichment compared to other amplification types.

bioRxiv · May 6, 2024 · PreprintBioinformatics