Author

Christopher Hakkaart

ORCID 0000-0001-5007-2684Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Philip EwelsiD· 2 shared Alexander LezhavaiD· 1 shared Alexander PeltzeriD· 1 shared Alexandre H. ThiéryiD· 1 shared Alexey SokoloviD· 1 shared Alicia OshlackiD· 1 shared Andre SimiD· 1 shared Andreia Neves do AmaraliD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Philip EwelsORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedJul 29, 2025

Empowering bioinformatics communities with Nextflow and nf-core

Björn E. Langer, Andreia Neves do Amaral, Marie-Odile Baudement…·The Nf-Core Community

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

64 citationstop 1%

experimental assaybenchmarking

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GenomicsNature MethodsPeer-reviewedMar 13, 2025

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

Ying Chen, N. Davidson, Yuk Kei Wan…·Jonathan Göke

This study benchmarks Nanopore long read RNA sequencing in human cell lines, showing improved isoform resolution compared to short reads.

106 citationstop 1%

humanlong-read sequencing

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