Alexander Peltzer

Empowering bioinformatics communities with Nextflow and nf-core

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

The paper introduces nf-core/airrflow, a Nextflow-based workflow for processing AIRR-seq data, validated on simulated and real datasets to analyze immune receptor repertoires.

DamageProfiler: Fast damage pattern calculation for ancient DNA

DamageProfiler is a Java-based tool for analyzing damage patterns in ancient DNA, providing user-friendly interfaces and output formats for integration into analysis pipelines.

Reproducible, portable, and effcient ancient genome reconstruction with nf-core/eager

The paper introduces nf-core/eager, a Nextflow pipeline for ancient genome reconstruction, focusing on accessibility, reproducibility, and adaptability to modern practices.

nf-core: Community curated bioinformatics pipelines

A peer-reviewed, community-run framework for Nextflow analysis pipelines, plus helper tooling, meant to make workflows portable and reproducible across institutions rather than tied to one cluster.

Origin of modern syphilis and emergence of a contemporary pandemic cluster

This study analyzes the genetic patterns of modern syphilis strains and identifies a globally dominant pandemic cluster with azithromycin resistance.