Alexey Sokolov

Empowering bioinformatics communities with Nextflow and nf-core

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets

This study shows that high-fiber maternal diets alter gene expression and chromatin accessibility in fetuses and piglets, improving metabolic health and immune tolerance.

Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses

The paper describes open data sharing, analysis tools, and lessons learned from the European COVID-19 Data Platform's SARS-CoV-2 data collection and analysis efforts.

A draft genome sequence of the miniature parasitoid wasp, Megaphragma amalphitanum

This paper reports the genome and transcriptome of the miniature parasitoid wasp Megaphragma amalphitanum, finding that its genome size and gene content are comparable to other chalcid wasps, despite its extreme miniaturization.