Ke Yu

The paper constructs a database of organohalide-cycling genes and microorganisms in marine metagenomes, revealing new insights into halogenation-dehalogenation cycling and its microbial diversity.

This study shows that nitrite reduces the growth of Ca. Brocadia sapporoensis in anammox systems, leading to performance collapse, rather than directly inhibiting anammox activity.

This study introduces BASALT, a metagenomic binning toolkit that improves MAG recovery and quality, and applies it to a Salt Lake sediment sample to discover new Lokiarchaeotal MAGs.

AQMM provides an absolute quantification method for metagenome and metatranscriptome data, validated through simulations and real-world experiments.